Publications

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2024

Gomaa AE, El Mounadi K, Parperides E, Garcia-Ruiz H. Cell Fractionation and the Identification of Host Proteins Involved in Plant–Virus Interactions. Pathogens. 2024; 13(1):53. https://doi.org/10.3390/pathogens13010053

2023

Parperides, E., El Mounadi, K. & Garcia-Ruiz, H. (2023) Induction and suppression of gene silencing in plants by nonviral microbes. Molecular Plant Pathology, 24, 1347–1356. https://doi.org/10.1111/mpp.13362

2022

LaTourrette K, Garcia-Ruiz H. Determinants of Virus Variation, Evolution, and Host Adaptation. Pathogens. 2022; 11(9):1039. https://doi.org/10.3390/pathogens11091039

2021

LaTourrette, K., Holste, N., Rodriguez-Pena, R., Leme, R., Garcia-Ruiz, H. (2021). Genome-Wide Variation in Betacoronaviruses. Journal of Virology. https://doi.org/10.1128/JVI.00496-21

LaTourrette, K., Holste, N., Garcia-Ruiz, H. (2021), Polerovirus genomic variation. Virus Evolution. https://doi.org/10.1093/ve/veab102

2020

Nigam, D., LaTourrette, K., Garcia-Ruiz, H. (2020). Mutations in virus-derived small RNAs. Scientific Reports. 10 (9540). https://doi.org/10.1038/s41598-020-66374-2. 

Garcia-Ruiz, H., Holste, N. M., LaTourrette, K. (2020). Poleroviruses (Luteoviridae). In Reference Module in Life Sciences. Elsevier. https://doi.org/10.1016/b978-0-12-809633-8.21343-5. 
Holste, Natalie M & Garcia-Ruiz, H. Silencing Suppression Activity of a Polerovirus P0 Protein. Graduate Student Spring Research Fair (Cancelled for COVID-19), Lincoln, Nebraska, 2020 April
El-Mounadi K, Morales-Floriano ML, Garcia-Ruiz H. Principles, Applications, and Biosafety of Plant Genome Editing Using CRISPR-Cas9. Front Plant Sci. 2020 Feb 13;11:56. doi: 10.3389/fpls.2020.00056. PMID: 32117392; PMCID: PMC7031443. 

2019

Nigam D, LaTourrette K, Souza PFN, Garcia-Ruiz H. Genome-wide variation in potyviruses. Plant Sci., 2019 November 12; doi: 10.3389/fpls.2019.01439

Garcia-Ruiz, Hernan. Host factors against plant viruses. Mol Plant Pathol. 2019 Jul 8;. doi: 10.1111/mpp.12851. [Epub ahead of print] Review. PubMed PMID: 31286679; NIHMSID:NIHMS1037059.
Souza PFN, Garcia-Ruiz H, Carvalho FEL. What proteomics can reveal about plant-virus interactions? Photosynthesis-related proteins on the spotlight. Theor Exp Plant Physiol. 2019 Mar;31(1):227-248. doi: 10.1007/s40626-019-00142-0. Epub 2019 Jan 22. PubMed PMID: 31355128; PubMed Central PMCID: PMC6660014.
Garcia-Ruiz H. WHEN VIRUSES INFECT PLANTS. Scientia (Bristol). 2019 Jan 22;2019(123):40-43. PubMed PMID: 30881697; PubMed Central PMCID: PMC6417105.

2018
Garcia-Ruiz, H., Gabriel Peralta, S.M. and Harte-Maxwell, P. 2018. Tomato spotted wilt virus NSs protein supports infection and systemic movement of a potyvirus and is symptom determinant. Viruses 10 (3):129.
Mwathi Jane Wamaitha, Deepti Nigam, Solomon Maina, Francesca Stomeo, Anne Wangai, Joyce Njoki Njuguna, Timothy A. Holton, Bramwel W. Wanjala, Mark Wamalwa, Tanui Lucas, Appolinaire Djikeng and Hernan Garcia-Ruiz.. 2018. Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya. Virology Journal 15 (1):90.
Garcia-Ruiz, H. 2018. Susceptibility genes to plant viruses. Viruses 10 (9):484.
Garcia-Ruiz, H., Diaz, A., Ahlquist, P. 2018. Intermolecular RNA Recombination Occurs at Different Frequencies in Alternate Forms of Brome Mosaic Virus RNA Replication Compartments. Viruses 10 (3):131.

Garcia Ruiz, M. T., Knapp, A. N., and Garcia-Ruiz, H. 2018. Profile of genetically modified plants authorized in Mexico. GM Crops & Food. 9 (3):152-168.

2017

Ornelas-Ocampo, K., Ochoa-Martínez, D. L., Aranda-Ocampo, S., Ramírez-Rojas, S., and Garcia-Ruiz, H. 2017. Variability and symptoms caused by Irish yellow spot virus in Nicotiana benthamiana. Mexican Journal of Phytopathology 35,1-10. DOI: 10.18781/R.MEX.FIT.1707-2

2016

Garcia-Ruiz, H., García-Ruiz, M. T., Gabriel-Peralta, S. M., Miravel-Gabriel, C. B. and El-Mounadi, K. 2016. Mecanisms, aplicacions and perspectives of antiviral RNA silencing in plants. Mex J of Phytopathology 34(3): 286-307. DOI 10.18781/r.mex.fit.1606-8.

Ocampo TO, Gabriel Peralta SM, Bacheller N, Uiterwaal S, Knapp A, Hennen A, Ochoa Martinez DL, Garcia-Ruiz H. 2016. Antiviral RNA silencing suppression activity of Tomato spotted wilt virus NSs protein. Genet Mol Res 15 (2). DOI 10.4238/gmr.1502825.

2015
Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert K, Takeda A, Giampetrusi A, Garcia Ruiz MT, McGinn M, Lowery N, Martinez Baladejo MT, Carrington JC. 2015. Roles and Programming of Arabidopsis Argonaute Proteins During Turnip Mosaic Virus Infection. PLoS Pathogens 11: e1004755. PMID: 25806948.
Pope, W. H., et al. (2015). Whole genome comparison of a large collection of mycobacteriophages   reveals a continuum of phage genetic diversity. Elife 4: e06416.

Before 2016
Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert K, Takeda A, Giampetrusi A, Garcia Ruiz MT, McGinn M, Lowery N, Martinez Baladejo MT, Carrington JC. 2015. Roles and Programming of Arabidopsis Argonaute Proteins During Turnip Mosaic Virus Infection. PLoS Pathogens 11: e1004755. PMID: 25806948.
Pope, W. H., et al. (2015). Whole genome comparison of a large collection of mycobacteriophages   reveals a continuum of phage genetic diversity. Elife 4: e06416.
Zhang J, Li J, Garcia-Ruiz H, Bates PD, Mirkov TE, Wang X (2014). A stearoyl-acyl carrier protein desaturase, NbSACPD-C, is critical for ovule development in Nicotiana benthamiana. The Plant Journal 80(3): 489-502. PMID: 25155407.
Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, et al. (2012). Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell 24(9):3613-3629. PMCID: PMC3480291.
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, et al. (2010). Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell 22(2):481-496. PMCID: PMC2845422.
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, et al. (2010). Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell 22(2):481-496. PMCID: PMC2845422.
Grdzelishvili, V., Garcia-Ruiz, H., Watanabe, T., and Ahlquist, P. (2005). Mutual interference between genomic RNA replication and subgenomic mRNA transcription in Brome mosaic virus. J Virol 79(3):1438-1451. PMCID: PMC544081.
Garcia-Ruiz, H., and Murphy, J. (2001). Age-related resistance in bell pepper to cucumber mosaic virus. Ann. Appl. Biol. 139:307-317.